All Classes Interface Summary Class Summary Enum Summary Exception Summary
Class |
Description |
Abstract |
An abstract base class to be used by other CredentialHandler implementations.
|
Abstract |
An abstract implementation of the PoolInfoProvider.
|
Abstract |
An abstract base class that provides useful methods for all the
TransformationCatalog Implementations to use.
|
Abstract |
An abstract clusterer that the other clusterers can extend.
|
Abstract |
An abstract implementation of the JobAggregator interface, which the other
implementations can choose to extend.
|
Abstract |
An Abstract Base class implementing the CodeGenerator interface.
|
Abstract |
An abstract implementation of the CondorStyle interface.
|
Abstract |
An abstract implementation of the Profile Aggregators.
|
Abstract |
The Abstract Site selector.
|
Abstract |
An abstract implementation that implements some of the common functions in
the Implementation Interface that are required by all the implementations.
|
AbstractFileFactoryBasedMapper |
The abstract class that serves as the base class for the File Factory based mappers.
|
AbstractJob |
|
AbstractLogFormatter |
The abstract formatter that implements all of the functions except
the addEvent function
|
AbstractMultipleFTPerXFERJob |
An abstract implementation for implementations that can handle multiple
file transfers in a single file transfer job.
|
AbstractPerJob |
The base class for the site selectors that want to map one job at a time.
|
AbstractRefiner |
An abstract implementation that implements some of the common functions
in the Refiner Interface and member variables that are required by all the
refiners.
|
AbstractSingleFTPerXFERJob |
An abstract implementation for implementations that can handle only a single
file transfer in a single file transfer job.
|
AbstractSiteData |
The abstract data class for Site classes.
|
AbstractStrategy |
The interface that defines how the cleanup job is invoked and created.
|
AbstractXMLPrintVisitor |
The base class to be used by the various visitor implementors
for displaying the Site Catalog in different XML formats
|
ADag |
This class object contains the info about a Dag.
|
ADAG |
|
Adapter |
An adapter class that converts the SiteCatalogEntry class to older supported
formats and vice-versa
|
AggregatedJob |
This class holds all the specifics of an aggregated job.
|
Aggregator |
An internal interface, that allows us to perform aggregation functions
on profiles during merging of profiles.
|
Algorithm |
The HEFT based site selector.
|
All |
This implementation of the mapper generates maps for sites with installed as
well as stageable transformations.
|
Arch |
|
Architecture |
This class is transient for XML parsing.
|
ArgEntry |
This class carries an argument vector entry for the argument vector.
|
ArgString |
This class maintains the application that was run, and the
arguments to the commandline that were actually passed on to
the application.
|
Arguments |
This class maintains the application that was run, and the
arguments to the commandline that were actually passed on to
the application.
|
ArgVector |
This class maintains the application that was run, and the
arguments to the commandline that were actually passed on to
the application.
|
Authenticate |
It takes in a authenticate request and authenticates against the resource
on the basis of the type of the resource against which authentication is
required.
|
AuthenticateEngine |
It authenticates the user with the sites, that the user specifies at the
execution time.
|
AuthenticateRequest |
The object that describes the authenticate request.
|
Bag |
An interface to define a BAG of objects.
|
BalancedCluster |
An extension of the default refiner, that allows the user to specify
the number of transfer nodes per execution site for stagein and stageout.
|
Basic |
The default transfer refiner, that implements the multiple refiner.
|
BFS |
This does a modified breadth first search of the graph to identify the levels.
|
Boolean |
This class converts a boolean property specification (string) in various
representations into a booelan value.
|
Boot |
The boot element.
|
Braindump |
Braindump file code generator that generates a Braindump file for the
executable workflow in the submit directory.
|
Bundle |
An extension of the default refiner, that allows the user to specify
the number of transfer nodes per execution site for stagein and stageout.
|
Callback |
This interfaces defines the callback calls from DAX parsing.
|
Callback |
This interfaces defines the callback calls from PDAX parsing.
|
Callback |
This interface defines the callback calls from the partitioners.
|
Catalog |
This interface create a common ancestor for all cataloging
interfaces.
|
CatalogEntry |
This interface create a common ancestor for all catalog entries.
|
CatalogException |
Class to notify of failures.
|
CatalogType |
Abstract Type for RC and TC Sections of the DAX.
|
Chain |
This transfer refiner builds upon the Default Refiner.
|
Chain.SiteTransfer |
A container to manage the transfer jobs that are needed to be done on a
single site.
|
Chain.TransferChain |
A shallow container class, that contains the list of the names of the
transfer jobs and can return the last job in the list.
|
ClassADSGenerator |
A helper class, that generates Pegasus specific classads for the jobs.
|
Cleanup |
Uses pegasus-cleanup to do removal of the files on the remote sites.
|
CleanupEngine |
The refiner that results in the creation of cleanup jobs within the workflow.
|
CleanupFactory |
A factory class to load the appropriate type of Code Generator.
|
CleanupFactoryException |
Class to notify of failures while instantiating Cleanup Strategy and Implementation
classes.
|
CleanupImplementation |
The interface that defines how the cleanup job is invoked and created.
|
CleanupJobContent |
A container class that is used to hold the contents for a cleanup job
|
CleanupStrategy |
The interface that defines how the cleanup job is invoked and created.
|
Client |
|
CloseBrace |
Class to convey a closed brace, no token value necessary.
|
CloseParanthesis |
Class to convey a closed paranthesis, no token value necessary.
|
Cluster |
A cluster refiner that builds upon the Bundle Refiner.
|
Clusterer |
The clustering API, that constructs clusters of jobs out of a single
partition.
|
ClustererCallback |
A Callback implementation that passes the partitions detected during the
partitioning of the worflow to a Clusterer for clustering.
|
ClustererException |
The baseclass of the exception that is thrown by all Clusterers.
|
ClustererFactory |
A factory class to load the appropriate Partitioner, and Clusterer Callback
for clustering.
|
ClustererFactoryException |
Class to notify of failures while instantiating Clusterer implementations.
|
CodeGenerator |
The interface that allows us to plug in various code generators for writing
out the concrete plan.
|
CodeGeneratorException |
The baseclass of the exception that is thrown by all Code Generators.
|
CodeGeneratorFactory |
A factory class to load the appropriate type of Code Generator.
|
CodeGeneratorFactoryException |
Class to notify of failures while instantiating Code Generator implementations.
|
Command |
|
CommandLine |
This class maintains the application that was run, and the
arguments to the commandline that were actually passed on to
the application.
|
CommonProperties |
This class creates a common interface to handle package properties.
|
CompoundTransformation |
A data class to contain compound transformations.
|
Condor |
Enables a job to be directly submitted to the condor pool of which the
submit host is a part of.
|
Condor |
This helper class helps in handling the arguments specified in the
Condor namespace by the user either through dax or through profiles in pool.
|
Condor |
This uses the Condor File Transfer mechanism for the second level staging.
|
CondorC |
Enables a job to be directly submitted to the condor pool of which the
submit host is a part of.
|
CondorG |
This implementation enables a job to be submitted via CondorG to remote
grid sites.
|
CondorGenerator |
This class generates the condor submit files for the DAG which has to
be submitted to the Condor DagMan.
|
CondorGlideIN |
Enables a job to be submitted to nodes that are logically part of the local pool,
but physically are not.
|
CondorGlideinWMS |
Jobs targeting glidinWMS pools.
|
CondorQuoteParser |
A utility class to correctly quote arguments strings before handing over
to Condor.
|
CondorQuoteParserException |
This class is used to signal errors while parsing argument strings for
Condor Quoting.
|
CondorStyle |
An interface to allow us to apply different execution styles to a job
via Condor DAGMAN.
|
CondorStyleException |
A specific exception for the Condor Style generators.
|
CondorStyleFactory |
A factory class to load the appropriate type of Condor Style impelementations.
|
CondorStyleFactoryException |
Class to notify of failures while instantiating Condor Style implementations.
|
CondorVersion |
A utility class that allows us to determine condor version.
|
CondorVersion.CondorVersionCallback |
An inner class, that implements the StreamGobblerCallback to determine
the version of Condor being used.
|
ConfigXmlParser |
This is the parsing class, used to parse the pool config file in xml format.
|
Connection |
This data class describes a connection property for replica catalog.
|
CPlanner |
This is the main program for the Pegasus.
|
CPU |
The CPU element.
|
CreamCE |
Enables a job to be directly submitted to a remote CREAM CE front end
The CREAM CE support in Condor is documented at the following link
|
CreateDirectory |
This common interface that identifies the basic functions that need to be
implemented to introduce random directories in which the jobs are executed on
the remote execution pools.
|
CreateSampleSiteCatalog |
Generates a sample site catalog in XML.
|
CreateTCDatabase |
This class provides a bridge for creating and initializing transformation catalog on database .
|
CredentialHandler |
The credential interface that defines the credentials that can be associated
with jobs.
|
CredentialHandler.TYPE |
An enumeration of valid types of credentials that are supported.
|
CredentialHandlerFactory |
A factory class to load the appropriate type of Condor Style impelementations.
|
CredentialHandlerFactoryException |
Class to notify of failures while instantiating Condor Style implementations.
|
Currently |
Create a common interface to handle obtaining string timestamps.
|
DAG |
DAG Class to hold the DAG job object.
|
DagInfo |
Holds the information needed to make one dag file corresponding to a Abstract
Dag.
|
DAGJob |
This is a data class that stores the contents of the DAG job in a DAX conforming
to schema 3.0 or higher.
|
Dagman |
This profile namespace is the placeholder for the keys that go into the .dag
file .
|
Data |
This is the container for all the Data classes.
|
Data |
This class is transient for XML parsing.
|
Database |
|
Database |
This class implements a work catalog on top of a simple table in a
JDBC database.
|
DataReuseEngine |
The data reuse engine reduces the workflow on the basis of existing output
files of the workflow found in the Replica Catalog.
|
DAX |
Creates a DAX job object
|
DAX2CDAG |
This creates a dag corresponding to one particular partition of the whole
abstract plan.
|
DAX2Graph |
This callback implementation ends up building a detailed structure of the
graph referred to by the abstract plan in dax, that should make the graph
traversals easier.
|
DAX2LabelGraph |
The callback, that ends up building a label graph.
|
DAX2Metadata |
A callback that causes the parser to exit after the metadata about the DAX
has been parsed.
|
DAX2NewGraph |
An exploratory implementation that builds on the DAX2Graph.
|
DAXJob |
This is a data class that stores the contents of the DAX job in a DAX conforming
to schema 3.0 or higher.
|
DAXParser |
An interface for all the DAX Parsers
|
DAXParser2 |
This class parses the XML file whichis generated by Abstract Planner and ends
up making an ADag object which contains theinformation to make the Condor
submit files.
|
DAXParser3 |
This class uses the Xerces SAX2 parser to validate and parse an XML
document conforming to the DAX Schema 3.2
|
DAXParserFactory |
A factory class to load the appropriate DAX Parser and Callback implementations that need
to be passed to the DAX Parser.
|
DAXParserFactoryException |
Class to notify of failures while instantiating DAXCallback implementations.
|
DAXReplicaStore |
A generator that writes out the replica store containing a file based replica
catalog that has the file locations mentioned in the DAX.
|
DAXValidator |
This class reads to validate a DAX document.
|
DAXWriter |
The abstract class that identifies the interface for writing out a dax
corresponding to a partition.
|
Default |
The logging class that to log messages at different levels.
|
Default |
The default replica selector that is used if non is specifed by the user.
|
DefaultImplementation |
The default implementation for creating create dir jobs.
|
DefaultStreamGobblerCallback |
The default callback for the stream gobbler, that logs all the messages to
a particular logging level.
|
DeployWorkerPackage |
The refiner that is responsible for adding
- setup nodes that deploy a worker package on each deployment site at start
of workflow execution
- cleanup nodes that undeploy a worker package on each deployment site at end
workflow execution
|
Descriptor |
This class is the container for a file descriptor object.
|
Diamond |
An example class to highlight how to use the JAVA DAX API to generate a diamond
DAX.
|
Directory |
This class implements a replica catalog on top of a directory.
|
Directory |
The Directory class used for Site Catalog Schema version 4 onwards.
|
Directory.TYPE |
Enumerates the new directory types supported in this schema
|
DirectoryLayout |
An abstract base class that creates a directory type.
|
DirectoryNotEmptyException |
|
DirectoryRemovalException |
|
DynamicLoader |
This class provides a dynamic class loading facility.
|
Edge |
|
Edge |
An instance of this class represent an edge of workflow which is
data dependencies between two tasks.
|
Empty |
The default empty implementation to be used.
|
Empty |
An Empty implementation for performance evaluation purposes
|
Engine |
The class which is a superclass of all the various Engine classes.
|
ENV |
The environment namespace, that puts in the environment variables for the
transformation that is being run, through Condor.
|
EnvEntry |
This class pushes an environmental entry into the environment map.
|
Environment |
This class maintains the application that was run, and the
arguments to the commandline that were actually passed on to
the application.
|
Escape |
This class tries to define an interface to deal with quoting, escaping,
and the way back.
|
Escape |
This class tries to define an interface to deal with quoting, escaping,
and the way back.
|
Estimator |
This Estimator is used to find the near-optimal number of processors
required to complete workflow within a given RFT(requested finish time).
|
Event |
|
EventLogMessage |
This is a modification of gov.lbl.netlogger.LogMessage
This class lets you easily construct a set of typed (name, value) pairs
that formats itself as a CEDPS Best Practices log message.
|
EventLogMessage.Log4jFilter |
In log4j, ignore all messages not specifically directed
at this appender.
|
ExampleDAXCallback |
An example callback that prints out the various elements in the DAX.
|
Executable |
The interface which defines all the methods , any executable should implement.
|
Executable |
The Transformation Catalog object the represent the entries in the DAX transformation section.
|
Executable.ARCH |
ARCH Types
|
Executable.OS |
OS Types
|
ExitCode |
This class gets the exit code of a job from invocation record.
|
FactoryException |
The base exception class to notify of errors, while instantiating classes
via any of the factories.
|
Fifo |
This class is the container for a FIFO object.
|
File |
This is the new file based TC implementation storing the contents of the file
in memory.
|
File |
This class is the container for any File object, either the RC section, or uses
|
File |
This class is the base class for a file object.
|
File.LINK |
The linkages that a file can be of
|
File.TRANSFER |
Three Transfer modes supported, Transfer this file, don't transfer or stageout as well as optional.
|
FileExistsException |
|
FileInfo |
Stores information about a file or directory, such as its name, size, type,
etc.
|
FileServer |
This class describes a file server that can be used to stage data
to and from a site.
|
FileServerType |
An abstract class that describes a file server that can be used to stage data
to and from a site.
|
FileServerType.OPERATION |
The operations supported by the file server
|
FileSystemType |
An abstract class describing a filesystem type.
|
FileTransfer |
This is a container for the storing the transfers that are required in
between sites.
|
FindExecutable |
A convenice class that allows us to determine the path to an executable
|
Fixed |
A convenience mapper implementation that stages output files to a fixed
directory, specified using properties.
|
Flat |
Maps the output files to a flat directory on the output site.
|
FlushedCache |
This class implements a replica catalog which directly writes to the output
file.
|
GetDAX |
This class is responsible for the fetching the DAX'es on the basis of the
request ID's from the Windward Provenance Tracking Catalog.
|
GLite |
This implementation enables a job to be submitted via gLite to a
grid sites.
|
Globus |
This helper class helps in handling the globus rsl key value pairs that
come through profile information for namespace Globus.
|
GlobusVersion |
This is a data class that stores the globus version installed and to be used
on a particular pool for the gridftp server or the jobmanagers.
|
Graph |
The interface for the Graph Class.
|
GraphNode |
Data class that allows us to construct information about the nodes
in the abstract graph.
|
GraphNodeContent |
This inteface defines a common base for all the classes that can reside in
a GraphNode object.
|
GridFTPBandwidth |
This is a data class to store information about gridftp bandwidths between
various sites.
|
GridFTPConnection |
A connection to a GridFTP server
|
GridFTPException |
|
GridFTPServer |
This is a data class that is used to store information about a grid ftp server.
|
GridFTPURL |
|
GridGateway |
This class describes the Grid Gateway into a site.
|
GridGateway.JOB_TYPE |
An enumeration of types of jobs handled by an instance of a grid gateway.
|
GridGateway.SCHEDULER_TYPE |
An enumeration of valid schedulers on the grid gateway.
|
GridGateway.TYPE |
An enumeration of valid types of grid gateway.
|
GridStart |
The interface that defines how a job specified in the abstract workflow
is launched on the grid.
|
GridStartFactory |
An abstract factory class to load the appropriate type of GridStart
implementations, and their corresponding POSTScript classes.
|
GridStartFactoryException |
Class to notify of failures while instantiating GridStart implementations.
|
Group |
A site selector than ends up doing grouping jobs together on the basis of
an identifier specifed in the dax for the jobs, and schedules them on to the
same site.
|
GUC |
The implementation that is used to create transfer jobs that callout to
the new globus-url-copy client, that support multiple file transfers
|
HasDescriptor |
This interface defines a common base for all File elements in an invocation
record that carry a descriptor in their values.
|
HasFilename |
This interface defines a common base for all File elements in an invocation
record that carry a filename in their values.
|
Hashed |
Maps the output files in a Hashed Directory structure on the output site.
|
HashedFile |
A Condor Submit Writer, that understands the notion of hashed file directories.
|
HasText |
This interface defines a common base for all elements in an invocation
record that can carry text in their values.
|
HeadNodeFS |
This data class describes the HeadNode Filesystem layout.
|
HeadNodeScratch |
This data class describes the scratch area on a head node.
|
HeadNodeStorage |
This data class describes the storage area on a node.
|
Heft |
The HEFT based site selector.
|
HeftBag |
A data class that implements the Bag interface and stores the extra information
that is required by the HEFT algorithm for each node.
|
HeftGraphNodeComparator |
Comparator for GraphNode objects that allow us to sort on basis of
the downward rank computed.
|
Hints |
An empty mechanical implementation for the
namespace.
|
Horizontal |
The horizontal clusterer, that clusters jobs on the same level.
|
Horizontal |
Horizontal based partitioning scheme, that allows the user to configure the
number of partitions per transformation name per level.
|
Horizontal.GraphNodeComparator |
A GraphNode comparator, that allows us to compare nodes according to the
transformation logical names.
|
Horizontal.JobComparator |
A job comparator, that allows me to compare jobs according to the
transformation names.
|
HourGlass |
This class inserts the nodes for creating the random directories on the remote
execution pools.
|
Identifier |
Class to capture reserved words.
|
Ignore |
This class is transient for XML parsing.
|
Implementation |
The interface that defines how the create dir job is created.
|
Implementation |
The interface defines the functions that a particular Transfer Implementation
should implement.
|
ImplementationFactory |
The factory class that loads an appropriate Transfer Immplementation class,
as specified by the properties.
|
InMemory |
An implementation of the XMLProducer interface backed by a StringBuffer.
|
InPlace |
This generates cleanup jobs in the workflow itself.
|
Installed |
This class only generates maps for sites with installed transformations.
|
Installed |
This implementation of the Selector returns a list of TransformationCatalogEntry objects of type INSTALLED y on the submit site.
|
InternalMountPoint |
A data class to signify the Internal Mount Point for a filesystem.
|
InterPoolEngine |
This engine calls out to the Site Selector selected by the user and maps the
jobs in the workflow to the execution pools.
|
Invocation |
This abstract class defines a common base for all invocation record
related Java objects.
|
InvocationParser |
This class uses the Xerces SAX2 parser to validate and parse an XML
document which contains information from kickstart generated
invocation record.
|
InvocationRecord |
This class is the container for an invocation record.
|
Invoke |
The Notification invoke object for the Dax API
|
Invoke.WHEN |
WHEN To INVOKE
|
Irods |
A convenience class that allows us to determine the path to the user irodsEnvFile file.
|
IVPTest |
This class is used to test the InvocationParser class.
|
IVSElement |
This class keeps the name of an element and its corresponding
java object reference.
|
JDBCRC |
This class implements a replica catalog on top of a simple table in a
JDBC database.
|
Job |
The object of this class holds the information to generate a submit file about
one particular job making the Dag.
|
Job |
|
Job |
This class is contains the record from each jobs that ran in every
invocation.
|
JobAggregator |
The interface that dictates how the jobs are clumped together into one single
larger job.
|
JobAggregatorFactory |
A factory class to load the appropriate JobAggregator implementations while
clustering jobs.
|
JobAggregatorFactoryException |
Class to notify of failures while instantiating JobAggregator implementations.
|
JobAggregatorInstanceFactory |
A JobAggergator factory that caches up the loaded implementations.
|
JobManager |
This is a data class that is used to store information about a jobmanager and
the information that it reports about a remote pool.
|
JobStatus |
This abstract class is the interface for all classes that describe
the job exit, which describes more clearly failure, regular
execution, signal and suspension.
|
JobStatusFailure |
This class is transient for XML parsing.
|
JobStatusRegular |
This class is transient for XML parsing.
|
JobStatusSignal |
This class is transient for XML parsing.
|
JobStatusSuspend |
This class is transient for XML parsing.
|
Kickstart |
This enables a constituentJob to be run on the grid, by launching it through kickstart.
|
Label |
This partitioner partitions the DAX into smaller partitions as specified by
the labels associated with the jobs.
|
LabelBag |
A bag implementation that just holds a particular value for the label key.
|
ListCommand |
Implements the ls command for remote GridFTP servers
|
Load |
The RAM element.
|
Local |
This replica selector only prefers replicas from the local host and that
start with a file: URL scheme.
|
LocalDirectory |
This data class represents a local directory on a site.
|
Log4j |
A Log4j implementation of the LogManager interface.
|
LogEvent |
|
LogFormatter |
The interface that defines how the messages need to be formatted for logging
|
LogFormatterFactory |
A factory class to load the appropriate implementation of LogFormatter
as specified by properties.
|
LogFormatterFactoryException |
Class to notify of failures while instantiating Log Formatter
implementations.
|
LoggingKeys |
Defines keys for creating logs within the workflow system
|
LoggingKeys |
Some predifined logging keys to be used for logging.
|
LogManager |
The logging class that to log messages at different levels.
|
LogManagerFactory |
A factory class to load the appropriate implementation of Logger API
as specified by properties.
|
LogManagerFactoryException |
Class to notify of failures while instantiating Log Factory
implementations.
|
LRC |
This is a data class that is used to store information about a
local replica catalog, that is associated with a site in the pool configuration
catalog.
|
Machine |
The Machine element groups a time stamp, the page size, the generic
utsname information, and a machine-specific content collecting element.
|
MachineInfo |
An abstract class that is used for all the child elements that appear
in the machine element.
|
MachineSpecific |
This class collects the various OS-specific elements that we are capturing
machine information for.
|
MainEngine |
The central class that calls out to the various other components of Pegasus.
|
MakeDirectoryCommand |
Implements the mkdir command for remote GridFTP servers
|
MapGraph |
An implementation of the Graph that is backed by a Map.
|
Mapper |
This is an interface for generating valid TC maps which will be used for
executable staging.
|
Mapper |
An empty interface for all transfer Mappers that determine where a File
should be on a particular site.
|
MapperException |
The baseclass of the exception that is thrown by all Mappers.
|
MAX |
An implementation of the Aggregator interface that takes the maximum of the
profile values.
|
MdsQuery |
This Class queries the GT2 based Monitoring and Discovery Service (MDS)
and stores the remote sites information into a single data class.
|
MetaData |
Metadata object for the DAX API
|
Metrics |
Logs workflow metrics to a file in the submit directory and also sends them
over a HTTP connection to a Metrics Server.
|
MIN |
An implementation of the Aggregator interface that takes the minimum of the
profile values.
|
Minimal |
This strategy for adding create dir jobs to the workflow only adds the minimum
number of edges from the create dir job to the compute jobs in the workflow.
|
MonitordNotify |
A MonitordNotify Input File Generator that generates the input file required
for pegasus-monitord.
|
MPIExec |
This class aggregates the smaller jobs in a manner such that
they are launched at remote end, by mpiexec on n nodes where n is the nodecount
associated with the aggregated job that is being lauched by mpiexec.
|
MRC |
A multiple replica catalog implementation that allows users to query
different multiple catalogs at the same time.
|
MultipleFTPerXFERJob |
An empty interface, that allows for grouping of implementations that can
handle multiple file transfers per transfer job like old guc and Stork.
|
MultipleFTPerXFERJobRefiner |
The refiner interface, that determines the functions that need to be
implemented to add various types of transfer nodes to the workflow.
|
MultipleLook |
This class ends up writing a partitioned dax, that corresponds to one
partition as defined by the Partitioner.
|
Namespace |
The base namespace class that all the othernamepsace handling classes extend.
|
NameValue |
The object of this class holds the name value pair.
|
Netlogger |
This formatter formats the messages in the netlogger format.
|
NetloggerEvent |
The netlogger event.
|
NetloggerJobMapper |
This class can write out the job mappings that link jobs with jobs in the DAX
to a Writer stream in the netlogger format.
|
NetloggerPostScript |
This postscript invokes the netlogger-exitcode to parse the kickstart
output and write out in netlogger format.
|
NMI2VDSSysInfo |
An Adapter class that translates the new NMI based Architecture and OS
specifications to VDS ( VDS era ) Arch and Os objects
|
Node |
An instance of this class represents an independent task of a workflow.
|
NodeCollapser |
This collapses the nodes of the same logical name scheduled on the same
pool into fewer fat nodes.
|
NoGridStart |
This class ends up running the job directly on the grid, without wrapping
it in any other launcher executable.
|
NonJavaCallout |
This is the class that implements a call-out to a site selector which
is an application or executable script.
|
NoPOSTScript |
This class refers to having no postscript associated with the job.
|
NoSuchFileException |
|
Notifications |
A container class that stores all the notifications that need to be done
indexed by the various conditions.
|
OccupationDiagram |
This class keeps structure of an Occupation Diagram and conduct BTS algorithm
|
One2One |
This partitioning technique considers each of the job in the dax as a
separate partition.
|
OpenBrace |
Class to convey a opened brace, no token value necessary.
|
OpenParanthesis |
Class to convey a closed paranthesis, no token value necessary.
|
Os |
|
OSGMM |
The OSGMM implementation of the Site Catalog interface.
|
OSGMM.ListCallback |
An inner class, that implements the StreamGobblerCallback to store all
the lines in a List
|
OutputMapper |
The interface that defines how to map the output files to a stage out site.
|
OutputMapperFactory |
The factory class that loads an appropriate Transfer OutputMapper class,
as specified by the properties.
|
OutputMapperFactoryException |
Class to notify of failures while instantiating Output Mappers.
|
Parser |
This is the base class which all the xml parsing classes extend.
|
ParserStackElement |
This class keeps the name of an element and its corresponding
java object reference.
|
Partition |
This is an abstract container for a partition in the graph.
|
PartitionDAX |
The class ends up partitioning the dax into smaller daxes according to the
various algorithms/criteria, to be used for deferred planning.
|
Partitioner |
The abstract class that lays out the api to do the partitioning of the dax
into smaller daxes.
|
PartitionerFactory |
A Factory class to load the right type of partitioner at runtime, as
specified by the Properties.
|
PartitionerFactoryException |
Class to notify of failures while instantiating Partitioner implementations.
|
Patterns |
|
PBS |
This code generator generates a PBS submit script for the workflow, that
can be submitted directly using qsub.
|
PCRelation |
Captures the parent child relationship between the jobs in the ADAG.
|
PDAX2MDAG |
This callback ends up creating the megadag that contains the smaller dags
each corresponding to the one level as identified in the pdax file
generated by the partitioner.
|
PDAXCallbackFactory |
A factory class to load the appropriate DAX callback implementations that need
to be passed to the DAX Parser.
|
PDAXCallbackFactoryException |
Class to notify of failures while instantiating PDAXCallback implementations.
|
PDAXParser |
This is a parser class for the parsing the pdax that contain the jobs in the
various partitions and the relations between the partitions.
|
PDAXWriter |
It writes out the partition graph in xml form.
|
Pegasus |
A Planner specific namespace.
|
PegasusBag |
A bag of objects that needs to be passed to various refiners.
|
PegasusConfiguration |
A utility class that returns JAVA Properties that need to be set based on
a configuration value
|
PegasusExitCode |
The exitcode wrapper, that can parse kickstart output's and put them in the
database also.
|
PegasusExitCodeEncode |
This class tries to define a mechanism to encode arguments for
pegasus-exitcode, as DAGMan does not handle whitespaces correctly for
postscript arguments.
|
PegasusFile |
The logical file object that contains the logical filename which is got from
the DAX, and the associated set of flags specifying the transient
characteristics.
|
PegasusFile.LINKAGE |
Enumeration for denoting type of linkage
|
PegasusGetSites |
The client that replaces the perl based pegasus-get-sites.
|
PegasusGridFTP |
Implements a command-line utility for performing file and directory operations
on remote GridFTP servers.
|
PegasusLite |
This class launches all the jobs using Pegasus Lite a shell script based wrapper.
|
PegasusProperties |
A Central Properties class that keeps track of all the properties used by
Pegasus.
|
PegasusProperties.CLEANUP_SCOPE |
An enum defining The scope for cleanup algorithm
|
PegasusURL |
A common PegasusURL class to use by the planner and other components.
|
PegRandom |
A Helper class that returns the Random values
using java.util.Random class.
|
PermissionDeniedException |
|
PFN |
|
Pipeline |
|
PlannerCache |
A data class that is used to track the various files placed by the mapper on
the staging sites for the workflow.
|
PlannerMetrics |
A Data class containing the metrics about the planning instance.
|
PlannerOptions |
Holds the information about thevarious options which user specifies to
the Concrete Planner at runtime.
|
PlannerOptions.CLEANUP_OPTIONS |
The various cleanup options supported by the planner
|
PMC |
This code generator generates a shell script in the submit directory.
|
PoolConfig |
A data class to store information about the various remote sites.
|
PoolInfoProvider |
This is an abstract class which defines the interface for the information
providers like sites.xml, sites.catalog.
|
PoolMode |
This class determines at runtime which
implementing class to use as a Pool Handle.
|
POSTScript |
The interface that defines the creation of a POSTSCRIPT for a job.
|
PPS |
Pegasus P-assertion Support interface
Classes that implement this interface assist in the creation of p-assertions for the Pegasus workflow refinement system.
|
PPSFactory |
The factory for instantiating an XMLProducer.
|
PPSFactoryException |
Class to notify of failures while instantiating PPS implementations.
|
Proc |
The proc element.
|
Processor |
A data class that is used to simulate a processor on a site.
|
Profile |
This Class hold informations about profiles associated with a tc.
|
Profile |
Profile Object for the DAX API
|
Profile.NAMESPACE |
Supported NAMESPACES.
|
ProfileParser |
Converts between the string version of a profile specification
and the parsed triples and back again.
|
ProfileParserException |
This class is used to signal errors while parsing profile strings
|
Profiles |
Maintains profiles for different namespaces.
|
Profiles.NAMESPACES |
The enumeration of valid namespaces.
|
Proxy |
A convenice class that allows us to determine the path to the user proxy.
|
QuotedString |
Class to capture the content within a quoted string.
|
RAM |
The RAM element.
|
Random |
A random site selector that maps to a job to a random pool, amongst the subset
of pools where that particular job can be executed.
|
Random |
This implemenation of the TCSelector selects a random
TransformationCatalogEntry from a List of entries.
|
Rank |
The Rank class that ranks the DAX'es
|
RankDAX |
A client that ranks the DAX'es corresponding to the request id.
|
Ranking |
A Data class that associates a DAX with the rank.
|
RCClient |
This class interfaces the with the replica catalog API to delve into the
underlying true catalog without knowing (once instantiated) which one it is.
|
ReduceEdges |
An algorithm to reduce remove edges in the workflow, based on a DFS of a graph
and doing least common ancestor tranversals to detect duplicate edges.
|
Refiner |
A first cut at a separate refiner interface.
|
Refiner |
The refiner interface, that determines the functions that need to be
implemented to add various types of transfer nodes to the workflow.
|
RefinerFactory |
The factory class that loads an appropriate Transfer Refiner class,
as specified by the properties.
|
Regex |
This class implements a replica catalog on top of a simple file with regular
expression based entries, which contains two or more columns.
|
Regex |
A replica selector that allows the user to specific regex expressions that
can be used to rank various PFN's returned from the Replica Catalog for a
particular LFN.
|
Regex.Rank |
A Data class that allows us to compile a regex expression
and associate a rank value with it.
|
Regular |
This class is the container for a regular file object.
|
RemoteTransfer |
A common class, that builds up the state from the properties to determine
whether a user wants certain type of transfer jobs for particular site to
run remotely.
|
RemoteTransfer.TransferState |
An inner class that holds the state for a particular site,as to whether to
execute transfers remotely or not.
|
RemoveCommand |
Implements the rm command for remote GridFTP servers
|
RemoveDirectory |
Ends up creating a cleanup dag that deletes the remote directories that
were created by the create dir jobs.
|
Replica |
This class connects to a Replica Catalog backend to determine where an output
file should be placed on the output site.
|
ReplicaCatalog |
This interface describes a minimum set of essential tasks required
from a replica catalog.
|
ReplicaCatalog |
This data class describes the Replica Catalog associated with the site.
|
ReplicaCatalogBridge |
This coordinates the look up to the Replica Location Service, to determine
the logical to physical mappings.
|
ReplicaCatalogEntry |
The entry is a high-level logical structure representing the physical
filename, the site handle, and optional attributes related to the PFN
as one entity.
|
ReplicaCatalogException |
Class to notify of failures.
|
ReplicaFactory |
This factory loads a replica catalog, as specified by the properties.
|
ReplicaLocation |
A Data Class that associates a LFN with the PFN's.
|
ReplicaSelector |
A prototypical interface for a replica selector.
|
ReplicaSelectorFactory |
A factory class to load the appropriate type of Replica Selector, as
specified by the user at runtime in properties.
|
ReplicaSelectorFactoryException |
Class to notify of failures while instantiating ReplicaSelector implementations.
|
ReplicaStore |
A Replica Store that allows us to store the entries from a replica catalog.
|
Restricted |
A replica selector, that allows the user to specify good sites and bad sites
for staging in data to a compute site.
|
RM |
Use's RM to do removal of the files on the remote sites.
|
RoundRobin |
This ends up scheduling the jobs in a round robin manner.
|
RoundRobin |
This implementation of the Selector select a transformation from a list in a round robin fashion.
|
RunDirectoryFilenameFilter |
A filename filter for identifying the run directory
|
RunDirectoryFilenameFilter |
A filename filter for identifying the run directory
|
S3CFG |
A convenience class that allows us to determine the path to the user s3cfg file.
|
ScannerException |
This class is used to signal errors while scanning or parsing.
|
SCClient |
A client to convert site catalog between different formats.
|
Selector |
The selector namespace object.
|
SendMetrics |
A Send metrics class that is used to send metrics to the metrics server
using HTTP POST methods
|
SendMetricsResult |
|
Separator |
This class solely defines the separators used in the textual in-
and output between namespace, name and version(s).
|
Separator2Test |
This is the test program for the Separator class.
|
SeparatorTest |
This is the test program for the Separator class.
|
SeqExec |
This class aggregates the smaller jobs in a manner such that
they are launched at remote end, sequentially on a single node using
seqexec.
|
SharedDirectory |
This data class represents a shared directory on a site.
|
Shell |
This code generator generates a shell script in the submit directory.
|
ShowProperties |
Displays single specific values or all values from the current
system properties.
|
Simple |
This formatter formats the messages in the simple format.
|
SimpleEvent |
A Simple LogEvent implementation that is back by a StringBuffer.
|
SimpleFile |
This class implements a replica catalog on top of a simple file which
contains two or more columns.
|
SimpleServer |
|
SimpleServerThread |
|
SingleFTPerXFERJob |
An empty interface, that allows for grouping of implementations that can
handle only one file transfer per transfer job like old guc and Stork.
|
SingleFTPerXFERJobRefiner |
The refiner interface, that determines the functions that need to be
implemented to add various types of transfer nodes to the workflow.
|
SingleLook |
This class ends up writing a partitioned dax, that corresponds to one
partition as defined by the Partitioner.
|
Site |
A data class that models a site as a collection of processors.
|
SiteCatalog |
|
SiteCatalogEntry |
This data class describes a site in the site catalog.
|
SiteCatalogEntry3 |
This data class describes a site in the site catalog.
|
SiteCatalogException |
Class to notify of failures.
|
SiteCatalogReservedWord |
Class to capture reserved words.
|
SiteCatalogTextParser |
Parses the input stream and generates site configuration map as
output.
|
SiteCatalogTextScanner |
Implements the scanner for reserved words and other tokens that are
generated from the input stream.
|
SiteCatalogXMLMetadataParser |
A lightweight XML Parser class to just retrieve the meta data in first instance
of an element in a XML Document.
|
SiteCatalogXMLMetadataParser.StopParserException |
Private RuntimeException to stop the SAX Parser
|
SiteCatalogXMLParser |
An empty interface for Site Catalog XML parsers
|
SiteCatalogXMLParser3 |
This class uses the Xerces SAX2 parser to validate and parse an XML
document conforming to the Site Catalog schema v3.0
|
SiteCatalogXMLParser4 |
This class uses the Xerces SAX2 parser to validate and parse an XML
document conforming to the Site Catalog schema v4.0
|
SiteCatalogXMLParserFactory |
A factory class to load the appropriate Site Catalog Parser implementations
based on version in the site catalog element of the XML document
|
SiteCatalogXMLParserFactoryException |
Class to notify of failures while instantiating DAXCallback implementations.
|
SiteData |
The abstract base class for all site catalog classes.
|
SiteDataVisitor |
The Visitor interface for the Site Catalog Data Classes.
|
SiteFactory |
A factory class to load the appropriate implementation of Transformation
Catalog as specified by properties.
|
SiteFactory |
A factory class to load the appropriate implementation of Site Catalog
as specified by properties.
|
SiteFactoryException |
Class to notify of failures while instantiating Site Catalog
implementations.
|
SiteFactoryException |
Class to notify of failures while instantiating Site Catalog
implementations.
|
SiteInfo |
This is a data class that is used to store information about a single
remote site (pool).
|
SiteInfo2SiteCatalogEntry |
An adapter class that converts SiteInfo object to SiteCatalogEntry object.
|
SiteSelector |
The interface for the Site Selector.
|
SiteSelectorFactory |
A factory class to load the appropriate type of Site Selector, as
specified by the user at runtime in properties.
|
SiteSelectorFactoryException |
Class to notify of failures while instantiating SiteSelector implementations.
|
SiteStore |
The site store contains the collection of sites backed by a HashMap.
|
SLS |
This interface defines the second level staging process, that manages
the transfer of files from the headnode to the worker node temp and back.
|
SLSFactory |
A factory class to load the appropriate type of SLS Implementation to do
the Second Level Staging.
|
SLSFactoryException |
Class to notify of failures while instantiating SLS implementations.
|
Ssh |
A convenience class that allows us to determine the path to the user ssh private key file.
|
SSH |
Enables a job to be directly submitted to a remote PBS cluster using direct
ssh submission available as part of BOSCO
The CREAM CE support in Condor is documented at the following link
|
StackBasedXMLParser |
An abstract base class that XML Parsers can use if they use stack internally
to store the elements encountered while parsing XML documents using SAX
|
Staged |
This implementation only generates maps for sites where transformation can be staged
|
Staged |
This implementation of the Selector select a transformation of type STAGEABLE on all sites.
|
Stamp |
The Stamp element.
|
Stampede |
A Stampede Events Code Generator that generates events in netlogger format
for the exectuable workflow.
|
Stat |
The stat namespace object.
|
StatCall |
This class is the container for a complete call to stat() or fstat().
|
StatInfo |
This class is the container for the results of a call to either
stat() or fstat().
|
Status |
This class encapsulates the exit code or reason of termination for
a given job.
|
StorageType |
An Abstract Data class to describe the filesystem layout on a site, both
shared and local on a site/node
|
Stork |
This implementation generates files that can be understood by Stork.
|
Stork |
The implementation that creates transfer jobs referring to the stork data
placement scheduler that can handle only one transfer per job.
|
Strategy |
The interface that defines how the cleanup job is invoked and created.
|
StreamGobbler |
A Stream gobbler class to take care of reading from a stream and optionally
write out to another stream.
|
StreamGobblerCallback |
This interface defines the callback calls that are called from within the
StreamGobbler while working on a stream.
|
SUBDAXGenerator |
The class that takes in a dax job specified in the DAX and renders it into
a SUBDAG with pegasus-plan as the appropriate prescript.
|
Submit |
This implementation of the TCMapper returns a TCMap which only contains
Stageable executables from the Local site.
|
Submit |
This implementation of the Selector select a transformation of type STAGEABLE and only on the submit site.
|
SubmitDirectoryFilenameFilter |
A filename filter for identifying the submit directory
|
Sum |
An implementation of the Aggregator interface that sums the profile values.
|
Swap |
The swap element.
|
SysInfo |
A container class to keep system information associated with a Site entry in
the Site Catalog or a Transformation in the Transformation Catalog.
|
SysInfo.Architecture |
Enumerates the new architecture types supported in Pegasus.
|
SysInfo.OS |
Enumerates the new OS types supported in Pegasus.
|
T2 |
The implementation that creates transfer jobs referring to the T2
executable distributed with the Pegasus.
|
Task |
The proc element.
|
TCAdd |
|
TCClient |
A common client to add, modify, delete, query any Transformation Catalog
implementation.
|
TCConverter |
A client to convert transformation catalog between different formats.
|
TCDelete |
This is a TCClient class which handles the Delete Operations.
|
TCFormatUtility |
This is a utility class for converting transformation catalog into different formats.
|
TCMap |
This is a data class to store the TCMAP for a particular dag.
|
TCMode |
This class defines all the constants
referring to the various interfaces
to the transformation catalog, and
used by the Concrete Planner.
|
TCQuery |
|
TCType |
This is an enumerated data class for the different types of transformation.
|
Temporary |
This class is the container for a temporary file object.
|
Tentacles |
This Strategy instance places the create directory jobs at the top of the graph.
|
TestDAXParser |
A Test Class to demonstrate use of DAXParser and illustrates how to use
the Callbacks for the parser.
|
TestLogFormatter |
Test program to test out LogFormatter API
|
TestNamespace |
Test Class for namespaces.
|
TestReduceEdges |
|
TestReplicaCatalog |
A Test program that shows how to load a Replica Catalog, and query for entries sites.
|
TestSiteCatalog |
A Test program that shows how to load a Site Catalog, and query for all sites.
|
TestSiteCatalog |
A Test program that shows how to load a Site Catalog, and query for all sites.
|
TestTPT |
Client for testing the TPT class.
|
TestTransformationCatalog |
A Test program that shows how to load a Replica Catalog, and query for entries sites.
|
TestVORSSiteCatalog |
A Test program that shows how to load a Site Catalog, and query for all sites.
|
Text |
It gets the information about a pool by reading the multiline site
catalog that is in a multiline format.
|
Text |
A File based Transformation Catalog where each entry spans multiple lines.
|
ThreadPool |
This maintains a pool of authenticate threads that authenticate against a
particular resource.
|
Token |
Base class for the tokens passed from the Text Scanner to the parser.
|
Topological |
Does a topological sort on the Partition.
|
TopologicalSortIterator |
Does a topological sort on the Partition.
|
TPT |
A common class, that builds up the third party state for the sites from
the properties file.
|
TPT.TPTState |
An inner class that holds the third party state for a particular site.
|
TPTGUC |
The implementation that is used to create transfer jobs that callout to
the new globus-url-copy client, that support multiple file transfers
|
Transfer |
The implementation that creates transfer jobs referring to the python based
transfer script distributed with Pegasus since version 3.0
|
Transfer |
This uses the transfer executable distributed with Pegasus to do the
second level staging.
|
TransferEngine |
The transfer engine, which on the basis of the pools on which the jobs are to
run, adds nodes to transfer the data products.
|
TransferImplementationFactoryException |
Class to notify of failures while instantiating Transfer Implementations.
|
TransferJob |
This is a data class that stores the contents of the transfer job that
transfers the data.
|
TransferRefinerFactoryException |
Class to notify of failures while instantiating Transfer Refiners.
|
Transformation |
This Object is used to create a complex Transformation.
|
TransformationCatalog |
This class is an interface to the various TxCatalog implementations that Pegasus will use.
|
TransformationCatalogEntry |
An object of this class corresponds to a
tuple in the Transformation Catalog.
|
TransformationCatalogReservedWord |
Class to capture reserved words for the textual format of Transformation
Catalog
|
TransformationCatalogTextParser |
Parses the input stream and generates the TransformationStore as output.
|
TransformationCatalogTextScanner |
Implements the scanner for reserved words and other tokens that are
generated from the input stream for the Transformation Catalog.
|
TransformationFactory |
A factory class to load the appropriate implementation of Transformation
Catalog as specified by properties.
|
TransformationFactoryException |
Class to notify of failures while instantiating Transformation Catalog
implementations.
|
TransformationSelector |
|
TransformationStore |
A container data class that is used to store transformations.
|
Uname |
The uname element.
|
UniqueMerge |
Merges profile as a delimiter separated list.
|
Update |
An implementation of the Aggregator interface that always takes the
new profile value.
|
Usage |
This class is contains some excerpt from the getrusage call.
|
UserOptions |
A Singleton wrapper around the
PlannerOptions class to get hold
of the options specified by the
user to run Pegasus.
|
UserPOSTScript |
A user defined post script.
|
VDS2PegasusProperties |
A Central Properties class that keeps track of all the properties used by
Pegasus.
|
VDSSysInfo |
This class keeps the system information associated with a
resource or transformation.
|
VDSSysInfo2NMI |
An Adapter class that translates the old ( VDS era ) Arch and Os objects
to the new NMI based Architecture and OS objects.
|
Version |
This class solely defines the version numbers of PEGASUS.
|
VersionNumber |
This class just prints the current version number on stdout.
|
Vertical |
The vertical cluster, that extends the Default clusterer and topologically
sorts the partition before clustering the jobs into aggregated jobs.
|
Whole |
This partitioning technique considers the whole DAX as a single partition.
|
WorkCatalog |
The catalog interface to the Work Catalog, the erstwhile Work DB, that is
populated by tailstatd and associates.
|
WorkCatalogException |
Class to notify of failures.
|
WorkDir |
This is a data class that is used to store information about the scratch
work directory or the execution mount point on the remote pool.
|
WorkerNodeFS |
This data class describes the WorkerNode Filesystem layout.
|
WorkerNodeScratch |
This data class describes the scratch area on a head node.
|
WorkerNodeStorage |
This data class describes the storage area on worker nodes.
|
WorkerSharedDirectory |
This data class describes the directory shared only amongst worker nodes .
|
WorkFactory |
This factory loads a work catalog, as specified by the properties.
|
WorkFactoryException |
Class to notify of failures while instantiating Transformation Catalog
implementations.
|
WorkflowMetrics |
A Workflow metrics class that stores the metrics about the workflow.
|
WorkingDir |
This class is transient for XML parsing.
|
WriterCallback |
This callback writes out a DAX file for each of the partitions,
and also writes out a PDAX file that captures the relations
between the partitions.
|
XML |
It gets the information about a pool by reading the pool config xml that is
generated from querying mds or using the static information provided by the
user at the submit host.
|
XML |
An implementation of the Site Catalog interface that is backed up by
an XML file conforming to site catalog xml schema version 3.
|
XML2 |
A back port to old site catalog schema for the current Site Catalog API
This class parses XML documents that conform to site catalog schema version 2.
|
XML3PrintVisitor |
Prints the Site Catalog compatible with Site Catalog schema version 3
https://pegasus.isi.edu/wms/docs/schemas/sc-4.0/sc-3.0.html
|
XML3PrintVisitor.DirectoryTypes |
|
XML4PrintVisitor |
Prints the Site Catalog compatible with Site Catalog schema version 4
https://pegasus.isi.edu/wms/docs/schemas/sc-4.0/sc-4.0.html
|
XMLErrorHandler |
This class handles the errors which occur while enforcing validation against
the XML Schema.
|
XMLOutput |
This abstract class defines a common base for certain classes that
deal with the generation of XML files.
|
XMLProducer |
A PASOA specific interface to generate various assertions as XML.
|
XMLProducerFactory |
The factory for instantiating an XMLProducer.
|
XMLProducerFactoryException |
Class to notify of failures while instantiating XMLProducer implementations.
|
XMLWriter |
|